%xymappen.tex %Copyright (C) 1993, Shinsaku Fujita, All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %This file is a part of xymtex.tex that is the manual of the macro %package `XyMTeX' for drawing chemical structural formulas. %This file is not permitted to be translated into Japanese and any other %languages. \typeout{``xymappen.tex''--- This file is a part of xymtex.tex that is the manual of the macro % package `XyMTeX'. 1993/12/1 S. Fujita} %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \begin{thebibliography}{99} \bibitem{knuth} Knuth D., {\em The \TeX{}book}, Addison-Wesley, Reading (1984). \bibitem{bcsj} Ito T., {\em Kagaku to Kogyo}, {\bf 46}, 66 (1993). This article described that the Chemical Society of Japan changed the publishing process of its journal ({\em Bull. Chem. Soc. Jpn.}) on January 1993 into the one that is based on the combination of \TeX{} and SGML (Standard Generalized Mark-up Language). \bibitem{lamport} Lamport L., {\em \LaTeX{} A document Preparation System}, Addison-Wesley, Reading (1986). \bibitem{haas} Haas R. T. \& O'Kane K. C., {\em Comput. Chem.}, {\bf 11}, 251 (1987). \bibitem{ramek} Ramek, M., in Clark, M. (ed), \TeX: Applications, Uses, Methods, Ellis Horwood, London (1990), p. 277. \bibitem{fujita1} Fujita S., ``Typesetting structural formulas with the text formatter \TeX{}/\LaTeX{}'', {\em Comput. Chem.}, in press. \bibitem{fujita2} Fujita S., {\em Kagakusha-Seikagakusha no tame no \LaTeX{} (\LaTeX{} for Chemists and Biochemists)}, Tokyo Kagaku Dozin, Tokyo (1993). \bibitem{podar} Podar S., ``Enhancements to the picture environment of \LaTeX{}'', Manual for Version 1.2 dated July 14, 1986. \bibitem{fujita4} Fujita S., ``Promolecules with subsymmetry of {\bf D}$_{\infty h}$. Combinatorial enumeration and stereochemical properties'', {\em J. Chem. Inf. Comput. Sci.}, {\bf 32}, 354--363 (1992). \bibitem{fujita5} Fujita S., Koyama K., \& Ono S., ``Dye releasers for instant color photography'', {\em Rev. Heteroatom Chem.}, {\bf 7}, 229--267 (1992). \end{thebibliography} %%%%%%%%%%%%%%%%%%%%%%%% \appendix \chapter{List of Commands} \section{aliphat.sty} The style file `aliphat.sty' contains the following commands % ********************************* % * aliphat.sty: list of commands * % ********************************* % \begin{verbatim} % % % % \tetrahedral \@tetrahedral % \square \@square % % % % \rtrigonal \@rtrigonal % \ltrigonal \@ltrigonal % \utrigonal \@utrigonal % \Utrigonal \@Utrigonal % \dtrigonal \@dtrigonal % \Dtrigonal \@Dtrigonal % % % % \ethylene \@ethylene % \ethylenev \@ethylenev % \Ethylenev \@Ethylenev % % % % \tetrastereo \@tetrastereo % \dtetrastereo \@dtetrastereo % \ethanestereo \@ethanestereo % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%% \section{carom.sty} The style file `carom.sty' contains the following commands. % ******************************* % * carom.sty: list of commands * % ******************************* \begin{verbatim} % % % % \cyclohexanev \@cyclohexanev % \bzdrv \@bzdrv % \decalinev \@decalinev % \naphdrv \@naphdrv % \tetralinev \@tetralinev % \hanthracenev \@hanthracenev % \anthracenev \@anthracenev % \hphenanthrenev \@hphenanthrenev % \phenanthrenev \@phenanthrenev % \steroid \@steroid % \steroidchain \@steroidchain % % % % \cyclohexaneh \@cyclohexaneh % \bzdrh \@bzdrh % \decalineh \@decalineh % \naphdrh \@naphdrh % \tetralineh \@tetralineh % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%%%% \section{lowcycle.sty} The style file `lowcycle.sty' contains the following commands. % ********************************* % * lowcycle.sty: list of commands* % ********************************* % \begin{verbatim} % % \cyclopentanev \@cyclopentanev % \cyclopentanevi \@cyclopentanevi % \cyclopentaneh \@cyclopentaneh % \cyclopentanehi \@cyclopentanehi % \indanev \@indanev % \indanevi \@indanevi % \indaneh \@indaneh % \indanehi \@indanehi % \cyclobutane \@cyclobutane % \cyclopropane \@cyclopropane % % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%% \section{ccycle.sty} The style file `ccycle.sty' contains the following commands. % ******************************** % * ccycle.sty: list of commands * % ******************************** \begin{verbatim} % % % % \chair \@chair % \bicychepv \@bicychepv % \bicycheph \@bicycheph % \bornane \@bornane % \adamantane \@damantane % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%%% \section{hetarom.sty} The style file `hetarom.sty' contains the following commands. % ******************************** % * hetarom.sty: list of commands * % ********************************* \begin{verbatim} % % % Basic Macros % % \sixheterov \@sixheterov % \sixheterovi \@sixheterovi % % Application Macros % % \pyridinev \@pyridinev % \pyridinevi \@pyridinevi % \pyrazinev \@pyrazinev % \pyrimidinev \@pyrimidinev % \pyrimidinevi \@pyrimidinevi % \pyridazinev \@pyridazinev % \pyridazinevi \@pyridazinevi % \triazinev \@triazinev % \triazinevi \@triazinevi % % % Basic Macros % % \fiveheterov \@fiveheterov % \fiveheterovi \@fiveheterovi % % Application Macros % % \pyrrolev \@pyrrolev % \pyrazolev \@pyrazolev % \imidazolev \@imidazolev % \isoxazolev \@isoxazolev % \oxazolev \@oxazolev % \pyrrolevi \@pyrrolevi % \pyrazolevi \@pyrazolevi % \imidazolevi \@imidazolevi % \isoxazolevi \@isoxazolevi % \oxazolevi \@oxazolevi % % % Basic Macros % % \decaheterov \@decaheterov % \decaheterovi \@decaheterovi % % Application Macros % % \quinolinev \@quinolinev % \quinolinevi \@quinolinevi % \isoquinolinev \@isoquinolinev % \isoquinolinevi \@isoquinolinevi % \quinoxalinev \@quinoxalinev % \quinazolinev \@quinazolinev % \quinazolinevi \@quinazolinevi % \cinnolinev \@cinnolinev % \cinnolinevi \@cinnolinevi % \pteridinev \@pteridinev % \pteridinevi \@pteridinevi % % % Basic Macros % % \nonaheterov \@nonaheterov % \nonaheterovi \@nonaheterovi % % Application Macros % % \purinev \@purinev % \purinevi \@purinevi % \indolev \@indolev % \indolevi \@indolevi % \indolizinev \@indolizinev % \indolizinevi \@indolizinevi % \isoindolev \@isoindolev % \isoindolevi \@isoindolevi % \benzofuranev \@benzofuranev % \benzofuranevi \@benzofuranevi % \isobenzofuranev \@isobenzofuranev % \isobenzofuranevi \@isobenzofuranevi % \benzoxazolev \@benzoxazolev % \benzoxazolevi \@benzoxazolevi % % % % \fourhetero \@fourhetero % % % % \threehetero \@threehetero % % % % \sixunitv \@sixunitv % \fiveunitv \@fiveunitv % \fiveunitvi \@fiveunitvi % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%%%% \section{hetaromh.sty} The style file `hetaromh.sty' contains the following commands. % ********************************** % * hetaromh.sty: list of commands * % ********************************** \begin{verbatim} % % % % Basic Macros % % \sixheteroh \@sixheteroh % \sixheterohi \@sixheterohi % % Application Macros % % \pyridineh \@pyridineh % \pyridinehi \@pyridinehi % \pyrazineh \@pyrazineh % \pyrimidineh \@pyrimidineh % \pyrimidinehi \@pyrimidinehi % \pyridazineh \@pyridazineh % \pyridazinehi \@pyridazinehi % \triazineh \@triazineh % \triazinehi \@triazinehi % % % % Basic Macros % % \fiveheteroh \@fiveheteroh % \fiveheterohi \@fiveheterohi % % Application Macros % % \pyrroleh \@pyrroleh % \pyrazoleh \@pyrazoleh % \imidazoleh \@imidazoleh % \isoxazoleh \@isoxazoleh % \oxazoleh \@oxazoleh % \pyrrolehi \@pyrrolehi % \pyrazolehi \@pyrazolehi % \imidazolehi \@imidazolehi % \isoxazolehi \@isoxazolehi % \oxazolehi \@oxazolehi % % % % Basic Macros % % \decaheteroh \@decaheteroh % \decaheterohi \@decaheterohi % % Application Macros % % \quinolineh \@quinolineh % \quinolinehi \@quinolinehi % \isoquinolineh \@isoquinolineh % \isoquinolinehi \@isoquinolinehi % \quinoxalineh \@quinoxalineh % \quinazolineh \@quinazolineh % \quinazolinehi \@quinazolinehi % \cinnolineh \@cinnolineh % \cinnolinehi \@cinnolinehi % \pteridineh \@pteridineh % \pteridinehi \@pteridinehi % % % % Basic Macros % % \nonaheteroh \@nonaheteroh % \nonaheterohi \@nonaheterohi % % Application Macros % % \purineh \@purineh % \purinehi \@purinehi % \indoleh \@indoleh % \indolehi \@indolehi % \indolizineh \@indolizineh % \indolizinehi \@indolizinehi % \isoindoleh \@isoindoleh % \isoindolehi \@isoindolehi % \benzofuraneh \@benzofuraneh % \benzofuranehi \@benzofuranehi % \isobenzofuraneh \@isobenzofuraneh % \isobenzofuranehi \@isobenzofuranehi % \benzoxazoleh \@benzoxazoleh % \benzoxazolehi \@benzoxazolehi % % % % \sixunith \@sixunith % \fiveunith \@fiveunith % \fiveunithi \@fiveunithi % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%% \section{hcycle.sty} The style file `hcycle.sty' contains the following commands. % ******************************** % * hcycle.sty: list of commands * % ******************************** \begin{verbatim} % % % % \pyranose \@pyranose % \furanose \@furanose % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%% \section{chemstr.sty} The style file `chemstr.sty' contains the following commands. % ********************************* % * chemstr.sty: list of commands * % ********************************* \begin{verbatim} % % % % \rmoiety % \lmoiety % \putlatom % \putratom % \putlratom % \Putlratom % % % \setsixringv (on a vertical six-membered ring) % \setdecaringv (on a decaline (six-six) ring) % \setfusedbond (at fused bond positions) % \setatombond (at an appropiate position) % \setsixringh (on a horizontal six-membered ring) % \end{verbatim} %%%%%%%%%%%%%%%%%%%%%%% \section{locant.sty} The style file `locant.sty' contains the following commands. % ********************************* % * locant.sty: list of commands * % ********************************* \begin{verbatim} % % \sxlocant \sxloocant % \bdlocant \bdloocant % \sxlocnth \sxloocnth % \bdlocnth \bdloocnth % \end{verbatim}